Index

A

AbstractExecutor (class in appyter.execspec.spec) add_file() (in module appyter.extras.catalog_integration.uploads) add_instance() (in module appyter.extras.catalog_integration.notebooks) adhoc_ssl_context() (in module appyter.ext.cryptography) alist() (in module appyter.ext.itertools) anext() (in module appyter.ext.asyncio.helpers) app_messager() (in module appyter.render.flask_app.development) app_runner() (in module appyter.render.flask_app.development) appyter module appyter.cli module appyter.context module appyter.execspec module appyter.execspec.core module appyter.execspec.implementations module appyter.execspec.implementations.cavatica module appyter.execspec.implementations.dispatch module appyter.execspec.implementations.docker module appyter.execspec.implementations.kube module appyter.execspec.implementations.local module appyter.execspec.implementations.subprocess module appyter.execspec.implementations.wes module appyter.execspec.registry module appyter.execspec.spec module appyter.ext module appyter.ext.aiohttp module appyter.ext.asyncio module appyter.ext.asyncio.event_emitter module appyter.ext.asyncio.event_loop module appyter.ext.asyncio.helpers module appyter.ext.asyncio.subprocess module appyter.ext.asyncio.test_subprocess module appyter.ext.asyncio.try_n_times module appyter.ext.click module appyter.ext.contextlib module appyter.ext.cryptography module appyter.ext.dict module appyter.ext.drs module appyter.ext.emitter module appyter.ext.exceptions module appyter.ext.flask module appyter.ext.fsspec module appyter.ext.fsspec.chroot module appyter.ext.fsspec.core module appyter.ext.fsspec.drs module appyter.ext.fsspec.fuse module appyter.ext.fsspec.mapperfs module appyter.ext.fsspec.overlayfs module appyter.ext.fsspec.sbfs module appyter.ext.fsspec.singleton module appyter.ext.fsspec.spec module appyter.ext.fsspec.spec.composable module appyter.ext.fsspec.spec.mountable module appyter.ext.fsspec.spec.sync_async module appyter.ext.fsspec.storage module appyter.ext.fsspec.util module appyter.ext.fsspec.writecache module appyter.ext.functools module appyter.ext.hashlib module appyter.ext.importlib module appyter.ext.io module appyter.ext.itertools module appyter.ext.json module appyter.ext.multiprocessing module appyter.ext.nbclient module appyter.ext.pathlib module appyter.ext.pathlib.chroot module appyter.ext.pytest module appyter.ext.re module appyter.ext.socketio module appyter.ext.socketio.chunked_emit module appyter.ext.socketio.client module appyter.ext.socketio.forwarding module appyter.ext.socketio.priority_queued_emit module appyter.ext.socketio.server module appyter.ext.subprocess module appyter.ext.tempfile module appyter.ext.urllib module appyter.ext.uuid module appyter.ext.watchgod module appyter.ext.watchgod.watcher module appyter.extras module appyter.extras.catalog_integration module appyter.extras.catalog_integration.executor module appyter.extras.catalog_integration.notebooks module appyter.extras.catalog_integration.request module appyter.extras.catalog_integration.storage module appyter.extras.catalog_integration.uploads module

appyter.extras.catalog_integration.user_config module appyter.extras.catalog_integration.userfs module appyter.fields module appyter.helpers module appyter.helpers.commandify module appyter.helpers.dockerize module appyter.helpers.fetch_and_serve module appyter.helpers.init module appyter.helpers.nbclean module appyter.helpers.serve module appyter.magic module appyter.orchestration module appyter.orchestration.cli module appyter.orchestration.dispatcher module appyter.orchestration.dispatcher.core module appyter.orchestration.dispatcher.socketio module appyter.parse module appyter.parse.nb module appyter.parse.nbtemplate module appyter.profiles module appyter.profiles.biojupies module appyter.profiles.bootstrap module appyter.profiles.default module appyter.profiles.default.blueprints module appyter.profiles.default.blueprints.locate module appyter.profiles.default.blueprints.StorageFileField module appyter.profiles.default.fields module appyter.profiles.default.fields.AutocompleteField module appyter.profiles.default.fields.BoolField module appyter.profiles.default.fields.ChoiceField module appyter.profiles.default.fields.DescriptionField module appyter.profiles.default.fields.FileField module appyter.profiles.default.fields.FloatField module appyter.profiles.default.fields.IntField module appyter.profiles.default.fields.MultiCheckboxField module appyter.profiles.default.fields.MultiChoiceField module appyter.profiles.default.fields.MultiFileField module appyter.profiles.default.fields.SectionField module appyter.profiles.default.fields.StringField module appyter.profiles.default.fields.TabField module appyter.profiles.default.fields.TextField module appyter.profiles.default.fields.TextListField module appyter.profiles.default.fields.VariableField module appyter.profiles.default.filters module appyter.profiles.default.filters.atob module appyter.profiles.default.filters.btoa module appyter.profiles.default.filters.fmt module appyter.profiles.default.filters.join_routes module appyter.profiles.default.filters.jsonify module appyter.profiles.default.filters.pyeval module appyter.profiles.default.filters.url_for module appyter.render module appyter.render.flask_app module appyter.render.flask_app.constants module appyter.render.flask_app.core module appyter.render.flask_app.development module appyter.render.flask_app.drs module appyter.render.flask_app.execution module appyter.render.flask_app.export module appyter.render.flask_app.livereload module appyter.render.flask_app.prepare module appyter.render.flask_app.production module appyter.render.flask_app.room_manager module appyter.render.flask_app.socketio module appyter.render.flask_app.static module appyter.render.flask_app.upload module appyter.render.form module appyter.render.nbconstruct module appyter.render.nbexecute module appyter.render.nbinspect module appyter.render.nbinspect.cli module appyter.render.nbinspect.cwl module appyter.render.nbinspect.jsonschema module appyter.render.nbinspect.nbtemplate_json module appyter.render.nbinspect.openapi module args() (appyter.fields.Field property) as_dict() (appyter.fields.FieldConstraintException method) assert_eq() (in module appyter.ext.pytest) assert_exc() (in module appyter.ext.pytest) async_copyfileobj() (in module appyter.ext.io) async_execute_cell() (appyter.ext.nbclient.NotebookClientIOPubHook method) async_setup_kernel() (appyter.ext.nbclient.NotebookClientIOPubHook method) async_try_n_times() (in module appyter.ext.asyncio.try_n_times) AsyncClient (class in appyter.ext.socketio.client) AsyncServer (class in appyter.ext.socketio.server) atob() (in module appyter.profiles.default.filters.atob) auth() (appyter.ext.urllib.URI property) authority() (appyter.ext.urllib.URI property) AutocompleteField (class in appyter.profiles.default.fields.AutocompleteField) awaitable_identity() (in module appyter.ext.asyncio.helpers)

B

BoolField (class in appyter.profiles.default.fields.BoolField)

btoa() (in module appyter.profiles.default.filters.btoa) build_fields() (in module appyter.fields)

C

cat_file() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.mapperfs.MapperFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.spec.sync_async.SyncAsyncFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method) CavaticaExecutor (class in appyter.execspec.implementations.cavatica) cell_has_error() (in module appyter.render.nbexecute) cell_is_code() (in module appyter.render.nbexecute) check() (in module appyter.render.flask_app.upload) ChoiceField (class in appyter.profiles.default.fields.ChoiceField) choices() (appyter.fields.Field property) (appyter.profiles.default.fields.BoolField.BoolField property) ChrootFileSystem (class in appyter.ext.fsspec.chroot) ChrootPurePosixPath (class in appyter.ext.pathlib.chroot) CHUNK_SIZE (appyter.ext.fsspec.sbfs.SBFSFileSystem attribute) (appyter.ext.socketio.chunked_emit.ChunkedEmitMixin attribute) ChunkedEmitMixin (class in appyter.ext.socketio.chunked_emit) cleanup() (appyter.ext.fsspec.writecache.LocalTempFile method) clear() (appyter.ext.asyncio.event_emitter.EventEmitter method) click_argument_setenv() (in module appyter.ext.click) click_option_setenv() (in module appyter.ext.click) close() (appyter.ext.contextlib.ContextManagerAsHandle method) (appyter.ext.fsspec.writecache.LocalTempFile method) collapse() (in module appyter.ext.itertools) commit() (appyter.ext.fsspec.writecache.LocalTempFile method) ComposableAbstractFileSystem (class in appyter.ext.fsspec.spec.composable) connect() (appyter.ext.socketio.client.AsyncClient method)

constraint() (appyter.fields.Field method) (appyter.profiles.default.fields.AutocompleteField.AutocompleteField method) (appyter.profiles.default.fields.ChoiceField.ChoiceField method) (appyter.profiles.default.fields.FileField.FileField method) (appyter.profiles.default.fields.FloatField.FloatField method) (appyter.profiles.default.fields.IntField.IntField method) (appyter.profiles.default.fields.MultiCheckboxField.MultiCheckboxField method) (appyter.profiles.default.fields.MultiChoiceField.MultiChoiceField method) (appyter.profiles.default.fields.MultiFileField.MultiFileField method) (appyter.profiles.default.fields.StringField.StringField method) (appyter.profiles.default.fields.TabField.TabField method) (appyter.profiles.default.fields.TextField.TextField method) (appyter.profiles.default.fields.TextListField.TextListField method) (appyter.profiles.default.fields.VariableField.VariableField method) ContextManagerAsHandle (class in appyter.ext.contextlib) convert() (appyter.ext.click.Json method) copy() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.mapperfs.MapperFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method) cp_file() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.spec.sync_async.SyncAsyncFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method) create_app() (in module appyter.orchestration.dispatcher) (in module appyter.render.flask_app) create_userfs() (in module appyter.extras.catalog_integration.userfs)

D

data_files() (in module appyter.render.flask_app.static) decorator_in_production() (in module appyter.ext.flask) DescriptionField (class in appyter.profiles.default.fields.DescriptionField) dict_collision_free_update() (in module appyter.ext.dict) dict_filter_none() (in module appyter.ext.dict) dict_flatten() (in module appyter.ext.dict) dict_merge() (in module appyter.ext.dict) dict_typed_flatten() (in module appyter.ext.dict) dict_typed_unflatten() (in module appyter.ext.dict) dict_unflatten() (in module appyter.ext.dict)

discard() (appyter.ext.fsspec.writecache.LocalTempFile method) disconnect() (appyter.ext.socketio.priority_queued_emit.PriorityQueuedEmitMixin method) dispatcher() (in module appyter.orchestration.dispatcher.core) DispatchExecutor (class in appyter.execspec.implementations.dispatch) DockerExecutor (class in appyter.execspec.implementations.docker) drs_objects() (in module appyter.render.flask_app.drs) drs_objects_access() (in module appyter.render.flask_app.drs) drs_objects_fetch() (in module appyter.render.flask_app.drs) drs_service_info() (in module appyter.render.flask_app.drs) DRSFileSystem (class in appyter.ext.fsspec.drs)

E

emit() (appyter.ext.asyncio.event_emitter.EventEmitter method) (appyter.ext.socketio.chunked_emit.ChunkedEmitMixin method) (appyter.ext.socketio.forwarding.ForwardingMixin method) (appyter.ext.socketio.priority_queued_emit.PriorityQueuedEmitMixin method) endless_watch() (in module appyter.execspec.implementations.kube) ensure_async() (in module appyter.ext.asyncio.helpers) ensure_async_contextmanager() (in module appyter.ext.asyncio.helpers) ensure_async_func() (in module appyter.ext.asyncio.helpers) ensure_async_generator() (in module appyter.ext.asyncio.helpers) ensure_async_literal() (in module appyter.ext.asyncio.helpers) ensure_async_wrapper() (in module appyter.ext.asyncio.helpers) ensure_callable() (in module appyter.ext.functools) ensure_context() (in module appyter.ext.contextlib) ensure_drs() (in module appyter.ext.drs) ensure_joined() (in module appyter.render.flask_app.room_manager) ensure_list() (in module appyter.ext.itertools) ensure_room() (in module appyter.render.flask_app.room_manager)

ensure_storage() (in module appyter.ext.fsspec.storage) ensure_sync() (in module appyter.ext.asyncio.helpers) ensure_sync_contextmanager() (in module appyter.ext.asyncio.helpers) ensure_sync_coro() (in module appyter.ext.asyncio.helpers) ensure_sync_generator() (in module appyter.ext.asyncio.helpers) ensure_sync_wrapper() (in module appyter.ext.asyncio.helpers) enter_room() (in module appyter.render.flask_app.room_manager) EventEmitter (class in appyter.ext.asyncio.event_emitter) EventLoopThread (class in appyter.ext.asyncio.event_loop) exception_as_dict() (in module appyter.ext.exceptions) executor() (in module appyter.execspec.registry) exists() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.mapperfs.MapperFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.spec.sync_async.SyncAsyncFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method) expand_dotmap() (in module appyter.ext.dict) export() (in module appyter.render.flask_app.export)

F

favicon() (in module appyter.render.flask_app.static) Field (class in appyter.fields) field() (appyter.fields.Field property) FieldConstraintException file (appyter.extras.catalog_integration.uploads.FileInfo attribute) file_watcher() (in module appyter.render.flask_app.development) FileField (class in appyter.profiles.default.fields.FileField) FileInfo (class in appyter.extras.catalog_integration.uploads) filename (appyter.extras.catalog_integration.uploads.FileInfo attribute) filter_blueprints() (in module appyter.context) find_blueprints() (in module appyter.context) find_blueprints_dir_mappings() (in module appyter.context) find_fields() (in module appyter.context) find_fields_dir_mappings() (in module appyter.context) find_filters() (in module appyter.context) find_filters_dir_mappings() (in module appyter.context) find_room() (in module appyter.render.flask_app.room_manager) find_templates_dir() (in module appyter.context)

FloatField (class in appyter.profiles.default.fields.FloatField) flush() (appyter.ext.asyncio.event_emitter.EventEmitter method) fmt() (in module appyter.profiles.default.filters.fmt) forward() (appyter.ext.socketio.server.AsyncServer method) ForwardingMixin (class in appyter.ext.socketio.forwarding) fragment (appyter.ext.urllib.URI attribute) fragment_join() (appyter.ext.urllib.URI method) fragment_name() (appyter.ext.urllib.URI property) fragment_parent() (appyter.ext.urllib.URI property) fragment_path() (appyter.ext.urllib.URI property) fragment_posix_path() (appyter.ext.urllib.URI property) fragment_query() (appyter.ext.urllib.URI property) fragment_query_ex() (appyter.ext.urllib.URI property) fragment_query_string() (appyter.ext.urllib.URI property) from_json() (appyter.ext.fsspec.mapperfs.MapperFileSystem static method) (appyter.ext.fsspec.spec.composable.ComposableAbstractFileSystem static method) fs_mount() (in module appyter.ext.fsspec.fuse) fsspec_cp() (in module appyter.ext.fsspec.util) fsspec_read_and_run() (in module appyter.ext.fsspec.util)

G

generate_uuid() (in module appyter.ext.uuid) get_appyter_directory() (in module appyter.context) get_base_files() (in module appyter.render.flask_app.constants) get_cwd_fs() (in module appyter.render.flask_app.constants) get_deep_fields() (in module appyter.render.flask_app.constants) get_drs() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.mapperfs.MapperFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.sbfs.SBFSFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method) get_env() (in module appyter.context) (in module appyter.render.flask_app.constants) get_env_from_click() (in module appyter.context) get_env_from_flask() (in module appyter.context) get_env_from_kwargs() (in module appyter.context) get_event_loop() (in module appyter.ext.asyncio.event_loop) get_executor_class() (in module appyter.execspec.registry) get_extra_files() (in module appyter.context) get_fields() (in module appyter.render.flask_app.constants)

get_file() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.spec.sync_async.SyncAsyncFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method) get_form() (in module appyter.render.flask_app.constants) get_html_exporer() (in module appyter.render.flask_app.constants) get_index() (in module appyter.render.flask_app.static) get_input_fs() (in module appyter.render.flask_app.constants) get_ipynb_hash() (in module appyter.render.flask_app.constants) get_ipynb_io() (in module appyter.render.flask_app.constants) get_j2_env() (in module appyter.render.flask_app.constants) get_jinja2_env() (in module appyter.context) get_nbtemplate() (in module appyter.render.flask_app.constants) get_nbtemplate_json() (in module appyter.render.flask_app.constants) get_output_fs() (in module appyter.render.flask_app.constants) get_static_fs() (in module appyter.render.flask_app.constants) get_user_config() (in module appyter.extras.catalog_integration.user_config) glob() (appyter.ext.fsspec.spec.sync_async.SyncAsyncFileSystem method) GlobWatcher (class in appyter.ext.watchgod.watcher)

H

hashsum_dict() (in module appyter.ext.hashlib) hashsum_io() (in module appyter.ext.hashlib)

hashsum_str() (in module appyter.ext.hashlib) hostname (appyter.ext.urllib.URI attribute) http_serve_ctx() (in module appyter.ext.pytest)

I

importdir() (in module appyter.ext.importlib) importdir_deep() (in module appyter.ext.importlib) info() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.mapperfs.MapperFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.spec.sync_async.SyncAsyncFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method) init() (in module appyter.magic) instance (appyter.extras.catalog_integration.notebooks.InstanceInfo attribute)

InstanceInfo (class in appyter.extras.catalog_integration.notebooks) interrupt() (in module appyter.ext.subprocess) IntField (class in appyter.profiles.default.fields.IntField) iopub_hook_factory() (in module appyter.render.nbexecute) ipynb_options_from_sys_argv() (in module appyter.helpers.commandify) is_relative_to() (in module appyter.ext.pathlib) is_remote() (in module appyter.ext.flask) isasynccontextmanager() (in module appyter.ext.asyncio.helpers) iscontextmanager() (in module appyter.ext.asyncio.helpers)

J

join() (appyter.ext.pathlib.chroot.ChrootPurePosixPath method) (appyter.ext.urllib.URI method) join_routes() (in module appyter.ext.flask) join_slash() (in module appyter.ext.urllib)

join_url() (in module appyter.ext.urllib) js_url() (appyter.fields.Field property) Json (class in appyter.ext.click) json_emitter_factory() (in module appyter.ext.emitter) jsonify() (in module appyter.profiles.default.filters.jsonify)

K

KubernetesExecutor (class in appyter.execspec.implementations.kube)

L

list_files() (in module appyter.extras.catalog_integration.uploads) LocalExecutor (class in appyter.execspec.implementations.local) LocalTempFile (class in appyter.ext.fsspec.writecache) locate() (in module appyter.profiles.default.blueprints.locate) lock (appyter.orchestration.dispatcher.core.LockedOrderedDict attribute)

LockedOrderedDict (class in appyter.orchestration.dispatcher.core) ls() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.mapperfs.MapperFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.spec.sync_async.SyncAsyncFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method)

M

makedirs() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.mapperfs.MapperFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.spec.sync_async.SyncAsyncFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method) MapperFileSystem (class in appyter.ext.fsspec.mapperfs) memcached() (in module appyter.ext.functools) metadata (appyter.extras.catalog_integration.notebooks.InstanceInfo attribute) (appyter.extras.catalog_integration.uploads.FileInfo attribute) mkdir() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.mapperfs.MapperFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.spec.sync_async.SyncAsyncFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method) mktemp() (in module appyter.ext.tempfile) module appyter appyter.cli appyter.context appyter.execspec appyter.execspec.core appyter.execspec.implementations appyter.execspec.implementations.cavatica appyter.execspec.implementations.dispatch appyter.execspec.implementations.docker appyter.execspec.implementations.kube appyter.execspec.implementations.local appyter.execspec.implementations.subprocess appyter.execspec.implementations.wes appyter.execspec.registry appyter.execspec.spec appyter.ext appyter.ext.aiohttp appyter.ext.asyncio appyter.ext.asyncio.event_emitter appyter.ext.asyncio.event_loop appyter.ext.asyncio.helpers appyter.ext.asyncio.subprocess appyter.ext.asyncio.test_subprocess appyter.ext.asyncio.try_n_times appyter.ext.click appyter.ext.contextlib appyter.ext.cryptography appyter.ext.dict appyter.ext.drs appyter.ext.emitter appyter.ext.exceptions appyter.ext.flask appyter.ext.fsspec appyter.ext.fsspec.chroot appyter.ext.fsspec.core appyter.ext.fsspec.drs appyter.ext.fsspec.fuse appyter.ext.fsspec.mapperfs appyter.ext.fsspec.overlayfs appyter.ext.fsspec.sbfs appyter.ext.fsspec.singleton appyter.ext.fsspec.spec appyter.ext.fsspec.spec.composable appyter.ext.fsspec.spec.mountable appyter.ext.fsspec.spec.sync_async appyter.ext.fsspec.storage appyter.ext.fsspec.util appyter.ext.fsspec.writecache appyter.ext.functools appyter.ext.hashlib appyter.ext.importlib appyter.ext.io appyter.ext.itertools appyter.ext.json appyter.ext.multiprocessing appyter.ext.nbclient appyter.ext.pathlib appyter.ext.pathlib.chroot appyter.ext.pytest appyter.ext.re appyter.ext.socketio appyter.ext.socketio.chunked_emit appyter.ext.socketio.client appyter.ext.socketio.forwarding appyter.ext.socketio.priority_queued_emit appyter.ext.socketio.server appyter.ext.subprocess appyter.ext.tempfile appyter.ext.urllib appyter.ext.uuid appyter.ext.watchgod appyter.ext.watchgod.watcher appyter.extras appyter.extras.catalog_integration appyter.extras.catalog_integration.executor appyter.extras.catalog_integration.notebooks appyter.extras.catalog_integration.request appyter.extras.catalog_integration.storage appyter.extras.catalog_integration.uploads appyter.extras.catalog_integration.user_config appyter.extras.catalog_integration.userfs appyter.fields appyter.helpers appyter.helpers.commandify appyter.helpers.dockerize appyter.helpers.fetch_and_serve appyter.helpers.init appyter.helpers.nbclean appyter.helpers.serve appyter.magic appyter.orchestration appyter.orchestration.cli appyter.orchestration.dispatcher appyter.orchestration.dispatcher.core appyter.orchestration.dispatcher.socketio appyter.parse appyter.parse.nb appyter.parse.nbtemplate appyter.profiles appyter.profiles.biojupies appyter.profiles.bootstrap appyter.profiles.default appyter.profiles.default.blueprints appyter.profiles.default.blueprints.locate appyter.profiles.default.blueprints.StorageFileField appyter.profiles.default.fields appyter.profiles.default.fields.AutocompleteField appyter.profiles.default.fields.BoolField appyter.profiles.default.fields.ChoiceField appyter.profiles.default.fields.DescriptionField appyter.profiles.default.fields.FileField appyter.profiles.default.fields.FloatField appyter.profiles.default.fields.IntField appyter.profiles.default.fields.MultiCheckboxField appyter.profiles.default.fields.MultiChoiceField appyter.profiles.default.fields.MultiFileField appyter.profiles.default.fields.SectionField appyter.profiles.default.fields.StringField appyter.profiles.default.fields.TabField appyter.profiles.default.fields.TextField appyter.profiles.default.fields.TextListField appyter.profiles.default.fields.VariableField appyter.profiles.default.filters appyter.profiles.default.filters.atob appyter.profiles.default.filters.btoa appyter.profiles.default.filters.fmt appyter.profiles.default.filters.join_routes appyter.profiles.default.filters.jsonify appyter.profiles.default.filters.pyeval appyter.profiles.default.filters.url_for appyter.render appyter.render.flask_app appyter.render.flask_app.constants appyter.render.flask_app.core appyter.render.flask_app.development appyter.render.flask_app.drs appyter.render.flask_app.execution appyter.render.flask_app.export appyter.render.flask_app.livereload appyter.render.flask_app.prepare appyter.render.flask_app.production appyter.render.flask_app.room_manager appyter.render.flask_app.socketio appyter.render.flask_app.static appyter.render.flask_app.upload appyter.render.form appyter.render.nbconstruct appyter.render.nbexecute appyter.render.nbinspect appyter.render.nbinspect.cli appyter.render.nbinspect.cwl appyter.render.nbinspect.jsonschema appyter.render.nbinspect.nbtemplate_json appyter.render.nbinspect.openapi

mount() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.spec.mountable.MountableAbstractFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method) MountableAbstractFileSystem (class in appyter.ext.fsspec.spec.mountable) MultiCheckboxField (class in appyter.profiles.default.fields.MultiCheckboxField) MultiChoiceField (class in appyter.profiles.default.fields.MultiChoiceField) MultiFileField (class in appyter.profiles.default.fields.MultiFileField) mv() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.mapperfs.MapperFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.spec.sync_async.SyncAsyncFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method)

N

name (appyter.ext.click.Json attribute) name() (appyter.ext.urllib.URI property) nb_from_ipynb_io() (in module appyter.parse.nb) nb_from_ipynb_string() (in module appyter.parse.nb) nb_from_json() (in module appyter.parse.nb) nb_to_ipynb_io() (in module appyter.parse.nb)

nb_to_ipynb_string() (in module appyter.parse.nb) nb_to_json() (in module appyter.parse.nb) nbexecute_async() (in module appyter.render.nbexecute) netloc() (appyter.ext.urllib.URI property) new_event_loop() (in module appyter.ext.asyncio.event_loop) NotebookClientIOPubHook (class in appyter.ext.nbclient)

O

off() (appyter.ext.asyncio.event_emitter.EventEmitter method) on() (appyter.ext.asyncio.event_emitter.EventEmitter method) (appyter.ext.socketio.server.AsyncServer method) on_get() (in module appyter.orchestration.dispatcher.core) on_join() (in module appyter.render.flask_app.room_manager)

on_submit() (in module appyter.orchestration.dispatcher.core) one_and_only() (in module appyter.ext.itertools) open() (appyter.ext.contextlib.ContextManagerAsHandle method) organize_file_content() (in module appyter.render.flask_app.upload) OverlayFileSystem (class in appyter.ext.fsspec.overlayfs)

P

parent() (appyter.ext.urllib.URI property) parent_url() (in module appyter.ext.urllib) parse() (appyter.execspec.spec.AbstractExecutor class method) parse_fields_from_nbtemplate() (in module appyter.parse.nbtemplate) parse_qs_values() (in module appyter.ext.urllib) PartialField (class in appyter.fields) password (appyter.ext.urllib.URI attribute) path (appyter.ext.urllib.URI attribute) port (appyter.ext.urllib.URI attribute) posix_path() (appyter.ext.urllib.URI property) post_index() (in module appyter.render.flask_app.core) post_ssr() (in module appyter.render.flask_app.core) prepare() (appyter.fields.Field method) (appyter.profiles.default.fields.FileField.FileField method) (appyter.profiles.default.fields.MultiFileField.MultiFileField method) (appyter.profiles.default.fields.TabField.TabField method) (appyter.profiles.default.fields.VariableField.VariableField method) prepare_data() (in module appyter.render.flask_app.prepare) prepare_executor() (in module appyter.extras.catalog_integration.executor) (in module appyter.render.flask_app.prepare) prepare_request() (in module appyter.extras.catalog_integration.request) (in module appyter.render.flask_app.prepare) prepare_results() (in module appyter.render.flask_app.prepare) prepare_storage() (in module appyter.extras.catalog_integration.storage) (in module appyter.render.flask_app.prepare)

prepare_uri() (appyter.profiles.default.fields.FileField.FileField method) PriorityQueuedEmitMixin (class in appyter.ext.socketio.priority_queued_emit) protocol (appyter.execspec.implementations.cavatica.CavaticaExecutor attribute) (appyter.execspec.implementations.dispatch.DispatchExecutor attribute) (appyter.execspec.implementations.docker.DockerExecutor attribute) (appyter.execspec.implementations.kube.KubernetesExecutor attribute) (appyter.execspec.implementations.local.LocalExecutor attribute) (appyter.execspec.implementations.subprocess.SubprocessExecutor attribute) (appyter.execspec.implementations.wes.WESExecutor attribute) (appyter.execspec.spec.AbstractExecutor attribute) (appyter.ext.fsspec.chroot.ChrootFileSystem attribute) (appyter.ext.fsspec.drs.DRSFileSystem attribute) (appyter.ext.fsspec.mapperfs.MapperFileSystem attribute) (appyter.ext.fsspec.overlayfs.OverlayFileSystem attribute) (appyter.ext.fsspec.writecache.WriteCacheFileSystem attribute) public_url() (appyter.profiles.default.fields.FileField.FileField property) (appyter.profiles.default.fields.MultiFileField.MultiFileField property) public_urls() (appyter.profiles.default.fields.MultiFileField.MultiFileField property) put_file() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.spec.sync_async.SyncAsyncFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method) pyeval() (in module appyter.profiles.default.filters.pyeval)

Q

query() (appyter.ext.urllib.URI property)

query_ex() (appyter.ext.urllib.URI property) query_string (appyter.ext.urllib.URI attribute)

R

raw_value() (appyter.fields.Field property) (appyter.profiles.default.fields.BoolField.BoolField property) (appyter.profiles.default.fields.DescriptionField.DescriptionField property) (appyter.profiles.default.fields.FileField.FileField property) (appyter.profiles.default.fields.FloatField.FloatField property) (appyter.profiles.default.fields.IntField.IntField property) (appyter.profiles.default.fields.MultiCheckboxField.MultiCheckboxField property) (appyter.profiles.default.fields.MultiChoiceField.MultiChoiceField property) (appyter.profiles.default.fields.MultiFileField.MultiFileField property) (appyter.profiles.default.fields.SectionField.SectionField property) (appyter.profiles.default.fields.TextListField.TextListField property) (appyter.profiles.default.fields.VariableField.VariableField property) re_full() (in module appyter.ext.re) realpath() (appyter.ext.pathlib.chroot.ChrootPurePosixPath method) register_implementation() (in module appyter.execspec.registry) relative_to() (appyter.ext.pathlib.chroot.ChrootPurePosixPath method) remove() (appyter.ext.asyncio.event_emitter.EventEmitter method) remove_client_from_room() (in module appyter.render.flask_app.room_manager) render() (appyter.fields.Field method) render_cell() (in module appyter.render.nbconstruct) render_cwl_from_nbtemplate() (in module appyter.render.nbinspect.cwl) render_form_from_nbtemplate() (in module appyter.render.form) render_jsonschema_from_nbtemplate() (in module appyter.render.nbinspect.jsonschema) render_nb_from_nbtemplate() (in module appyter.render.nbconstruct) render_nbtemplate_json_from_nbtemplate() (in module appyter.render.nbinspect.nbtemplate_json) render_openapi_from_nbtemplate() (in module appyter.render.nbinspect.openapi)

render_value() (appyter.fields.Field property) request_get() (in module appyter.ext.flask) rm() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.mapperfs.MapperFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.spec.sync_async.SyncAsyncFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method) rm_file() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.mapperfs.MapperFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.spec.sync_async.SyncAsyncFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method) rmdir() (appyter.ext.fsspec.chroot.ChrootFileSystem method) (appyter.ext.fsspec.mapperfs.MapperFileSystem method) (appyter.ext.fsspec.overlayfs.OverlayFileSystem method) (appyter.ext.fsspec.spec.sync_async.SyncAsyncFileSystem method) (appyter.ext.fsspec.writecache.WriteCacheFileSystem method) room_lock() (in module appyter.render.flask_app.room_manager) root_marker (appyter.ext.fsspec.chroot.ChrootFileSystem attribute) (appyter.ext.fsspec.mapperfs.MapperFileSystem attribute) (appyter.ext.fsspec.overlayfs.OverlayFileSystem attribute) (appyter.ext.fsspec.singleton.SingletonFileSystem attribute) route_join_with_or_without_slash() (in module appyter.ext.flask) run() (appyter.execspec.spec.AbstractExecutor method) (appyter.ext.asyncio.event_loop.EventLoopThread method) run_app() (in module appyter.ext.aiohttp) (in module appyter.render.flask_app.development)

S

safe_value() (appyter.fields.Field property) (appyter.profiles.default.fields.ChoiceField.ChoiceField property) (appyter.profiles.default.fields.TextField.TextField property) sanitize_sha1sum() (in module appyter.ext.uuid) sanitize_uuid() (in module appyter.ext.uuid) SBFSBufferedFile (class in appyter.ext.fsspec.sbfs) SBFSFileSystem (class in appyter.ext.fsspec.sbfs) scheme (appyter.ext.urllib.URI attribute) SectionField (class in appyter.profiles.default.fields.SectionField) secure_filepath() (in module appyter.ext.flask) secure_url() (in module appyter.ext.flask) serve() (in module appyter.render.flask_app.development) (in module appyter.render.flask_app.production) sh() (in module appyter.ext.asyncio.subprocess) sha1sum_dict() (in module appyter.ext.hashlib) sha1sum_io() (in module appyter.ext.hashlib) sha1sum_str() (in module appyter.ext.hashlib) SharedEventLoopThreadPoolExecutor (class in appyter.ext.asyncio.event_loop)

should_watch_dir() (appyter.ext.watchgod.watcher.GlobWatcher method) should_watch_file() (appyter.ext.watchgod.watcher.GlobWatcher method) SingletonFileSystem (class in appyter.ext.fsspec.singleton) siofu_done() (in module appyter.render.flask_app.upload) siofu_progress() (in module appyter.render.flask_app.upload) siofu_start() (in module appyter.render.flask_app.upload) slow_put() (in module appyter.orchestration.dispatcher.core) slugify() (in module appyter.ext.re) split_envvar_value() (appyter.ext.click.Json method) static() (in module appyter.render.flask_app.static) stop() (appyter.ext.asyncio.event_loop.EventLoopThread method) StorageFileField() (in module appyter.profiles.default.blueprints.StorageFileField) stream_readline_to_queue() (in module appyter.ext.asyncio.subprocess) StringField (class in appyter.profiles.default.fields.StringField) submit() (appyter.execspec.implementations.kube.KubernetesExecutor method) (in module appyter.render.flask_app.execution) SubprocessExecutor (class in appyter.execspec.implementations.subprocess) SyncAsyncFileSystem (class in appyter.ext.fsspec.spec.sync_async)

T

TabField (class in appyter.profiles.default.fields.TabField) tempdir() (in module appyter.ext.tempfile) template() (appyter.fields.Field property) test_subprocess() (in module appyter.ext.asyncio.test_subprocess) TextField (class in appyter.profiles.default.fields.TextField) TextListField (class in appyter.profiles.default.fields.TextListField) to_click() (appyter.fields.Field method) (appyter.profiles.default.fields.BoolField.BoolField method) (appyter.profiles.default.fields.DescriptionField.DescriptionField method) (appyter.profiles.default.fields.FloatField.FloatField method) (appyter.profiles.default.fields.IntField.IntField method) (appyter.profiles.default.fields.MultiCheckboxField.MultiCheckboxField method) (appyter.profiles.default.fields.MultiChoiceField.MultiChoiceField method) (appyter.profiles.default.fields.MultiFileField.MultiFileField method) (appyter.profiles.default.fields.SectionField.SectionField method) (appyter.profiles.default.fields.TextListField.TextListField method) to_cwl() (appyter.fields.Field method) (appyter.profiles.default.fields.BoolField.BoolField method) (appyter.profiles.default.fields.DescriptionField.DescriptionField method) (appyter.profiles.default.fields.FileField.FileField method) (appyter.profiles.default.fields.FloatField.FloatField method) (appyter.profiles.default.fields.IntField.IntField method) (appyter.profiles.default.fields.MultiCheckboxField.MultiCheckboxField method) (appyter.profiles.default.fields.MultiChoiceField.MultiChoiceField method) (appyter.profiles.default.fields.MultiFileField.MultiFileField method) (appyter.profiles.default.fields.SectionField.SectionField method) (appyter.profiles.default.fields.TextListField.TextListField method)

to_cwl_value() (appyter.fields.Field method) (appyter.profiles.default.fields.DescriptionField.DescriptionField method) (appyter.profiles.default.fields.FileField.FileField method) (appyter.profiles.default.fields.MultiCheckboxField.MultiCheckboxField method) (appyter.profiles.default.fields.MultiChoiceField.MultiChoiceField method) (appyter.profiles.default.fields.MultiFileField.MultiFileField method) (appyter.profiles.default.fields.SectionField.SectionField method) (appyter.profiles.default.fields.TextListField.TextListField method) to_json() (appyter.ext.fsspec.mapperfs.MapperFileSystem method) (appyter.ext.fsspec.spec.composable.ComposableAbstractFileSystem method) to_jsonschema() (appyter.fields.Field method) (appyter.profiles.default.fields.BoolField.BoolField method) (appyter.profiles.default.fields.DescriptionField.DescriptionField method) (appyter.profiles.default.fields.FileField.FileField method) (appyter.profiles.default.fields.FloatField.FloatField method) (appyter.profiles.default.fields.IntField.IntField method) (appyter.profiles.default.fields.MultiCheckboxField.MultiCheckboxField method) (appyter.profiles.default.fields.MultiChoiceField.MultiChoiceField method) (appyter.profiles.default.fields.MultiFileField.MultiFileField method) (appyter.profiles.default.fields.SectionField.SectionField method) (appyter.profiles.default.fields.StringField.StringField method) (appyter.profiles.default.fields.TextField.TextField method) (appyter.profiles.default.fields.TextListField.TextListField method) try_json_dumps() (in module appyter.ext.json) try_json_loads() (in module appyter.ext.json) try_n_times() (in module appyter.ext.asyncio.try_n_times)

U

update_fragment_query() (appyter.ext.urllib.URI method) update_query() (appyter.ext.urllib.URI method) upload_from_request() (in module appyter.render.flask_app.upload) upload_user_to_storage() (in module appyter.extras.catalog_integration.userfs) URI (class in appyter.ext.urllib) uri() (appyter.profiles.default.fields.FileField.FileField property) (appyter.profiles.default.fields.MultiFileField.MultiFileField property)

uris() (appyter.profiles.default.fields.MultiFileField.MultiFileField property) url_filename() (in module appyter.ext.urllib) url_for() (in module appyter.profiles.default.filters.url_for) url_to_chroot_fs() (in module appyter.ext.fsspec.core) url_to_emitter() (in module appyter.ext.emitter) url_to_executor() (in module appyter.execspec.core) url_to_fs_ex() (in module appyter.ext.fsspec.core) username (appyter.ext.urllib.URI attribute)

V

value() (appyter.fields.Field property) (appyter.profiles.default.fields.FileField.FileField property) (appyter.profiles.default.fields.MultiCheckboxField.MultiCheckboxField property) (appyter.profiles.default.fields.MultiChoiceField.MultiChoiceField property) (appyter.profiles.default.fields.MultiFileField.MultiFileField property) (appyter.profiles.default.fields.TextListField.TextListField property) (appyter.profiles.default.fields.VariableField.VariableField property)

VariableField (class in appyter.profiles.default.fields.VariableField)

W

wait() (appyter.ext.asyncio.event_emitter.EventEmitter method) wait_for() (appyter.execspec.implementations.kube.KubernetesExecutor method) WESExecutor (class in appyter.execspec.implementations.wes) with_app_running() (in module appyter.ext.aiohttp) with_event_loop() (in module appyter.ext.asyncio.event_loop) with_fragment() (appyter.ext.urllib.URI method) with_fragment_path() (appyter.ext.urllib.URI method) with_fragment_query() (appyter.ext.urllib.URI method) with_fragment_query_string() (appyter.ext.urllib.URI method)

with_hostname() (appyter.ext.urllib.URI method) with_many() (in module appyter.ext.contextlib) with_password() (appyter.ext.urllib.URI method) with_path() (appyter.ext.urllib.URI method) with_port() (appyter.ext.urllib.URI method) with_query() (appyter.ext.urllib.URI method) with_query_string() (appyter.ext.urllib.URI method) with_scheme() (appyter.ext.urllib.URI method) with_username() (appyter.ext.urllib.URI method) WriteCacheFileSystem (class in appyter.ext.fsspec.writecache)