Welcome to Ma’ayanlab Bioinformatics’s documentation!

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Ma’ayanlab Bioinformatics

A collection of useful functions for bioinformatics data analysis.

This library contains many functions and methods I use again and again in different analyses including:

• quantile normalization

• other common normalizations

• logcpm, zscore, filter variance

• gmt parser

• single-cell sparse matrix parsing

• transcript to gene conversions

• …

• various dge including chdir, lima_voom, etc..

Installation

pip install git+https://github.com/Maayanlab/maayanlab-bioinformatics.git

# [OPTIONAL] for some functionality like limma_voom & filter_by_expr
R -e "source('setup.R')"