The Dexamethasone Benchmark Resource

Datasets and Code to Evaluate Algorithms for Transcriptomics Data Analysis

graphical abstract

The Dex-Benchmark Resource provides datasets and template workflows needed for benchmarking different tools for gene expression analysis. These datasets include microarray, RNA-seq, L1000, and ChIP-seq data related to dexamethasone and known targets such as NR3C1. Template workflows can be downloaded along with raw data to benchmark a set of gene expression profiles. Example code and visualizations are also provided.

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Xie Z, Chen C, Ma'ayan A. Dex-Benchmark: datasets and code to evaluate algorithms for transcriptomics data analysis. PeerJ. 2023 Nov 8;11:e16351. doi: 10.7717/peerj.16351. PMID: 37953774; PMCID: PMC10638921.